Historical download audit

LEGACY Historical audit routeThis route intentionally contains the long checksum ledger, older dictionaries and internal audit records. Return to recommended downloads for current objects.

Download hub · historical audit

Archived and internal versioned-file ledger

Historical object—not used by the current website or manuscript unless the current manifest explicitly lists it as a required layer. Older dictionaries, debug logs, reviewer responses and intermediate tables remain available for provenance; their filenames are versioned and their identities never override the current objects.

Candidate download layer. The current website overlay is v1.2.0-measured-dmd-evidence. Historical archives remain unchanged and checksum-addressed; DOI/archive deposition and manuscript submission remain pending.

LEGACY v0.7 field dictionary

Historical dictionary retained for provenance. New integrations should start with the Schema 1.1 dictionary.

Download legacy dictionary

Hosted release layers

The fixed source release generates the complete SQLite object and portable RO-Crate, but direct Sites hosting of the ZIP is excluded. Current APIs, tables, code, QC, checksums and the Workbench overlay remain individually hosted.

Verify source-release RO-Crate manifest · feature_delta_head_comparison.tsv

External candidate-evidence import kit

Header-only TSV template · Field dictionary · JSON Schema · Preflight validator · Protocol

The three gates are provenance, context match and statistical interpretation. A nonsignificant P value alone does not establish a negligible effect. Preflight verdicts are advisory and never change candidate status automatically.

Leave-GFOD2-out sensitivity addendum

Read the result · Two-stage intervals · Module-block intervals · 20 claim gates · SHA-256 manifest · Reproduction script

Package map

269 downloads shown.

All versioned downloads
File	Category	Status	Size	SHA-256
00_repeated_balanced_crossfit_protocol_20260717.md	Documentation / figure	present	6.0 KB	`b91c2c357e4b…`
01_repeated_balanced_seed_manifest.tsv	Reusable table	present	1.5 KB	`4c617b6945e8…`
02_reproduction_tolerance_debug_log_20260717.md	Documentation / figure	present	1.9 KB	`172d6be575f1…`
34_major_revision_response_matrix_20260716.md	Documentation / figure	present	7.9 KB	`42ef5c204158…`
35_claim_ladder_and_scientific_identity_20260716.md	Documentation / figure	present	2.9 KB	`c75f4487bec0…`
36_analysis_chronology_and_freeze_protocol_20260716.md	Documentation / figure	present	2.9 KB	`49c7c6fd0c93…`
37_feature_leakage_ledger.tsv	Reusable table	present	3.2 KB	`758ddf66e611…`
38_model_cards_20260716.md	Documentation / figure	present	5.8 KB	`2a83cef61f5b…`
39_resource_audit_comparison.tsv	Reusable table	present	2.8 KB	`ac946a69d957…`
40_reproducibility_levels_manifest.tsv	Reusable table	present	2.1 KB	`0ce92a75fcb3…`
41_lockbox_noise_ceiling_protocol_20260716.md	Documentation / figure	present	2.1 KB	`2b4cadaf9ab7…`
42_user_task_evaluation_protocol_20260716.md	Documentation / figure	present	2.0 KB	`cbc828c47f92…`
52_v21_evidence_aligned_figure_caption_package_20260717.md	Documentation / figure	present	14.5 KB	`8bd348cbeb51…`
54_v21_focused_peer_review_20260717.md	Documentation / figure	present	7.6 KB	`901ecf618a1d…`
55_v21_primary_model_card_addendum_20260717.md	Documentation / figure	present	4.9 KB	`544860098f1a…`
57_v22_repeated_balanced_crossfit_status_20260717.md	Documentation / figure	present	4.1 KB	`8bae417619fd…`
58_v22_fold_stability_model_card_addendum_20260717.md	Documentation / figure	present	2.7 KB	`ac5c01841397…`
build_gfod2_exclusion_sensitivity_v01.py	Code	present sensitivity addendum	26.3 KB	`8ee0b87c5a57…`
candidate_current_status.tsv	Reusable table	present	7.5 KB	`4c3f19d4d8bb…`
candidate_evidence_vector_v06.tsv	Reusable table	present	10.5 KB	`8dc9ab61686f…`
candidate_signature_stability.tsv	Reusable table	present	2.8 KB	`fa1fc06a4ff6…`
candidate_status_history.tsv	Reusable table	present	4.2 KB	`d03429dd821d…`
depmap_26q1_leave_hepg2_out_provenance.json	JSON / metadata	present	444 B	`9b6cd4ebf3a0…`
depmap_leave_hepg2_out_summary.tsv	Reusable table	present	1.4 KB	`16303f27a4a8…`
depmap_leave_hepg2_out_vs_released.tsv	Reusable table	present	2.2 KB	`792b49df472e…`
direct_head_design_sensitivity.tsv	Reusable table	present	2.5 KB	`6525ef793bc4…`
direct_head_endpoint_effects.tsv	Reusable table	present	2.0 KB	`8c8770b6db37…`
dmd_multisource_evidence_module_counts.tsv	Reusable table	present	155 B	`f098f3a6212e…`
dmd_multisource_evidence_modules.tsv	Reusable table	present	4.6 MB	`8b8d963b9c28…`
dmd_signature2_meta_analysis_readiness.tsv	Reusable table	present	858 B	`73465c6d0cdb…`
dmd_source_specific_gene_effects.tsv	Reusable table	present	6.9 MB	`043acb200491…`
downloads_manifest.tsv	Reusable table	present	48.3 KB	`c8f4f7ce8532…`
evidence_transition_rules.tsv	Reusable table	present	1.2 KB	`b971eb3c4463…`
execution_metadata.json	JSON / metadata	present	2.3 KB	`6f1a8c6ceecc…`
external_candidate_evidence_data_dictionary.tsv	Reusable table	present	5.3 KB	`8a917e83aeab…`
EXTERNAL_CANDIDATE_EVIDENCE_IMPORT_PROTOCOL.md	Documentation / figure	present	1.2 KB	`f950afcd5bb3…`
external_candidate_evidence_import_template.tsv	Reusable table	present	693 B	`ef762f65611f…`
external_candidate_evidence.schema.json	JSON / metadata	present	4.0 KB	`54c9b7b4b287…`
external_context_uncertainty.tsv	Reusable table	present	1.4 KB	`507d6d0b20f4…`
external_validation_registry.tsv	Reusable table	present	730 B	`897ada459536…`
feature_ablation_cross_seed_summary.tsv	Reusable table	present	2.0 KB	`5a58b6dde116…`
feature_ablation_gates.tsv	Reusable table	present	3.9 KB	`4c400a7bdc8c…`
FEATURE_ABLATION_LEAKAGE_AUDIT_REPORT.md	Documentation / figure	present	18.8 KB	`163819960daf…`
feature_ablation_vs_full_cross_seed.tsv	Reusable table	present	3.3 KB	`f005373b1148…`
feature_delta_head_comparison.tsv	Reusable table	present	18.1 KB	`adee8ee620a0…`
feature_delta_paired_tests.tsv	Reusable table	present	3.2 KB	`153cf27eef99…`
feature_delta_strict_gate.tsv	Reusable table	present	1.0 KB	`8ec25caac308…`
feature_delta_uncertainty_summary.tsv	Reusable table	present	1.6 KB	`8bed174de67c…`
figure_legends_v21.md	Documentation / figure	present	3.0 KB	`9ff395bedbb6…`
figure_validation_report_v21.txt	Documentation / figure	present	712 B	`20f3c5f51e56…`
figure_validation_report_v22.json	JSON / metadata	present	3.3 KB	`2a5d820de512…`
figure1_design_update.tsv	Reusable table	present	177 B	`63219149a8c0…`
figure1_evidence_architecture_v21.pdf	Documentation / figure	present	46.9 KB	`9e1c0ce5797e…`
figure3_panel_a_design.tsv	Reusable table	present	177 B	`63219149a8c0…`
figure3_panel_b_primary_effects.tsv	Reusable table	present	2.9 KB	`2ff1a02b14bb…`
figure3_panels_c_d_primary_reliability_strata.tsv	Reusable table	present	2.9 KB	`a32d53df7af7…`
figure3_reliability_trends.tsv	Reusable table	present	1.1 KB	`93532ea3fce1…`
figure3_unique_target_benchmark_v21.pdf	Documentation / figure	present	60.8 KB	`821bb295ab05…`
final_gpu_closure_manifest_20260710.tsv	Reusable table	present	8.5 KB	`d62243b7afdc…`
`gears_and_ridge_same_coverage_scores.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	1011.9 KB	`5830940385b2…`
GEARS_FROZEN_SPLIT_BENCHMARK_REPORT.md	Documentation / figure	present	4.4 KB	`c21c5528ded9…`
gears_frozen_split_gates.tsv	Reusable table	present	732 B	`60c818c451aa…`
gears_frozen_split_paired_tests.tsv	Reusable table	present	6.3 KB	`9bedcfb7f11b…`
`gears_frozen_split_scores.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	497.8 KB	`2234159cacc0…`
gears_frozen_split_summary.tsv	Reusable table	present	2.4 KB	`d7c16d1032eb…`
gears_vs_ridge_v1.tsv	Reusable table	present	2.6 KB	`3a31418c95b3…`
gfod2_exclusion_candidate_action_summary.tsv	Reusable table	present sensitivity addendum	431 B	`ab6d8c41c2c6…`
gfod2_exclusion_claim_gate.tsv	Reusable table	present sensitivity addendum	3.5 KB	`ae78b24783b4…`
gfod2_exclusion_corrected_two_stage_uncertainty.tsv	Reusable table	present sensitivity addendum	1.4 KB	`6466d7ee64b7…`
gfod2_exclusion_manifest.json	JSON / metadata	present sensitivity addendum	8.1 KB	`82ca1ffc5f54…`
gfod2_exclusion_module_block_uncertainty.tsv	Reusable table	present sensitivity addendum	1.8 KB	`1fa57cb253cf…`
gfod2_exclusion_point_estimates.tsv	Reusable table	present sensitivity addendum	1.0 KB	`7e783ab9b66b…`
GFOD2_EXCLUSION_SENSITIVITY.md	Documentation / figure	present sensitivity addendum	2.0 KB	`2f89ccef5137…`
gfod2_target_effects_across_realizations.tsv	Reusable table	present sensitivity addendum	538 B	`4af9ad1baca6…`
gse293514_candidate_safety_flags.tsv	Reusable table	present	31.4 KB	`7ae2ab3c328b…`
gse293514_external_validation_summary.tsv	Reusable table	present	296 B	`4b6b0deb061d…`
gse293514_external_validation_tests.tsv	Reusable table	present	781 B	`b0528c4abdc8…`
GSE293514_MUSCLE_FUSION_EXTERNAL_VALIDATION.md	Documentation / figure	present	8.1 KB	`674f32ee97a9…`
gtex_v8_muscle_target_coverage.tsv	Reusable table	present	983 B	`b7b6a7ff21c4…`
gtex_v8_muscle_target_expression_detail.tsv	Reusable table	present	171.6 KB	`a16f6bb68239…`
gtex_v8_source_metadata.tsv	Reusable table	present	611 B	`3399aa5fd104…`
H1_H2_INDEPENDENT_VERIFICATION.md	Documentation / figure	present	244 B	`6ec29bf4b5aa…`
H1_UNIQUE_TARGET_AGGREGATE_REPORT.md	Documentation / figure	present	2.0 KB	`4fefd7a5979d…`
H2_UNIQUE_TARGET_CROSSFIT_REPORT.md	Documentation / figure	present	2.4 KB	`5b904535ae5e…`
H3_COVERAGE_SELECTION_REPORT.md	Documentation / figure	present	2.5 KB	`c7fe829a6fc1…`
H3_H4_INDEPENDENT_VERIFICATION.md	Documentation / figure	present	333 B	`059ab4bc7131…`
H4_RELIABILITY_STRATIFIED_EFFECT_REPORT.md	Documentation / figure	present	2.7 KB	`d087f1bd93e2…`
hepg2_candidate_decision_matrix_feature_delta_mlp_v2_lco.tsv	Reusable table	present	23.8 KB	`cae2b107669d…`
`large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite.part-aa` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	8.0 MB	`cc493de3f1f0…`
`large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite.part-ab` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	8.0 MB	`aafc8f596eae…`
`large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite.part-ac` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	8.0 MB	`cc44c27ef18f…`
`large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite.part-ad` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	8.0 MB	`6d2594d58dcd…`
`large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite.part-ae` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	3.4 MB	`af4a650fdcf0…`
large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/parts_manifest.tsv	Reusable table	multipart_hosting_manifest	701 B	`0483ac570d92…`
large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/README.txt	Documentation / figure	multipart_hosting_copy	946 B	`64c7c1919233…`
large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/reassemble_nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sh	Documentation / figure	multipart_hosting_helper	668 B	`874c175121c4…`
legacy_v05_download_resolution.tsv	Reusable table	present	18.3 KB	`6acd75bfc46a…`
legacy_v05_input_resolution.tsv	Reusable table	present	17.0 KB	`10cbaa49e2d7…`
linear_pca10_coverage.tsv	Reusable table	present	523 B	`03152ce6ea2e…`
linear_pca10_gates.tsv	Reusable table	present	752 B	`40c88aae2ef0…`
linear_pca10_paired_tests.tsv	Reusable table	present	6.7 KB	`75364f2aaf25…`
linear_pca10_summary.tsv	Reusable table	present	2.4 KB	`cbf70a872cd2…`
linear_pca10_vs_ridge_v1.tsv	Reusable table	present	2.4 KB	`efe1d22f0e65…`
MAJOR_REVISION_RETROSPECTIVE_AUDIT.md	Documentation / figure	present	1.7 KB	`1b70ba1fa027…`
muscle_context_summary.tsv	Reusable table	present	301 B	`2f5beac749df…`
muscle_target_coverage.tsv	Reusable table	present	704 B	`43331bcc81f3…`
nar_public_resource_gap_matrix_20260710.tsv	Reusable table	present	4.6 KB	`9b45e43df7ff…`
NATURE_METHODS_LINEAR_BASELINE_REPORT.md	Documentation / figure	present	5.8 KB	`e6ec55bbce22…`
nmd_support_score_components.tsv	Reusable table	present	5.3 KB	`00fef5f6daa3…`
nmd_vcell_data_dictionary_v0.5.0.tsv	Reusable table	present	122.0 KB	`9adcca0ec3d1…`
nmd_vcell_data_dictionary_v0.7.0-v22.tsv	Reusable table	present	219.3 KB	`18f584796549…`
nmd_vcell_data_dictionary_v0.8.1-v24r1.tsv	Reusable table	present	249.2 KB	`8e2ca8809271…`
`nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz` Locate in portable release	Data archive	RO-Crate only; direct site asset excluded	9.2 MB	`b88a3b9f1ae4…`
nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz.sha256	Manifest / checksum	present	123 B	`ecd6bc1e3008…`
nmd_vcell_release_checksums_v0.8.1-v24r1.sha256	Manifest / checksum	present	20.1 KB	`7bac816a7645…`
nmd_vcell_release_checksums.sha256	Manifest / checksum	present	16.1 KB	`98d0ec2db247…`
nmd_vcell_release_manifest.tsv	Reusable table	present	33.0 KB	`b521895aff63…`
`nmd_vcell_science_advances_v09_80_packet_20260821.zip` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	13.0 MB	`a840f05bedb2…`
`nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite` Verify registered archive	Data archive	Source release only; direct Sites asset excluded	35.4 MB	`874377d932b6…`
`noise_ceiling_batch_split.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	238.2 KB	`f5478f2b3554…`
`noise_ceiling_cell_split_half.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	1.0 MB	`ea6046852a69…`
noise_ceiling_guide_pair.tsv	Reusable table	present	25.1 KB	`8dee27aa4ad5…`
NOISE_CEILING_REPORT.md	Documentation / figure	present	1.3 KB	`0205fd56ad6c…`
noise_ceiling_summary.tsv	Reusable table	present	543 B	`ef359609505b…`
point_estimate_audit_long.tsv	Reusable table	present	2.4 KB	`3c96ebd5b1e8…`
point_estimate_audit_summary.tsv	Reusable table	present	285 B	`dc6df9726fb7…`
post416i_claim_ceiling_resource.tsv	Reusable table	present	1.5 KB	`06467644720a…`
PUBLICATION_GRADE_STATISTICAL_AUDIT.md	Documentation / figure	present	4.5 KB	`c6bb715941db…`
REPEATED_BALANCED_CROSSFIT_REPORT.md	Documentation / figure	present	2.0 KB	`95363069dd9a…`
repeated_heldout_gene_gates.tsv	Reusable table	present	587 B	`0152ce2f0943…`
repeated_heldout_gene_paired_tests.tsv	Reusable table	present	6.2 KB	`7f68cc485819…`
REPEATED_HELDOUT_GENE_RIDGE_REPORT.md	Documentation / figure	present	3.9 KB	`0e4d301ca3c6…`
repeated_heldout_gene_summary.tsv	Reusable table	present	2.2 KB	`91733307e798…`
repeated_ridge_effect_sizes.tsv	Reusable table	present	2.9 KB	`594d99f93355…`
repeated_split_gene_reuse.tsv	Reusable table	present	21.5 KB	`0e65b0765cf0…`
repeated_split_pairwise_overlap.tsv	Reusable table	present	1.6 KB	`ff13d6db6035…`
REVIEWER_CRITIQUE_UPGRADE_REPORT.md	Documentation / figure	present	16.9 KB	`0a0a3f4a8a4c…`
scgpt_and_ridge_same_coverage_scores.tsv	Reusable table	present	112.9 KB	`2d0bdc161494…`
SCGPT_FROZEN_SPLIT_BENCHMARK_REPORT.md	Documentation / figure	present	4.0 KB	`d414819daa3c…`
scgpt_frozen_split_gates.tsv	Reusable table	present	762 B	`79b98ed9f2d3…`
scgpt_frozen_split_paired_tests.tsv	Reusable table	present	6.5 KB	`e4453c832206…`
scgpt_frozen_split_scores.tsv	Reusable table	present	56.4 KB	`3c902fbb990f…`
scgpt_frozen_split_summary.tsv	Reusable table	present	2.4 KB	`d6a72b63c2d2…`
scgpt_vs_ridge_v1.tsv	Reusable table	present	2.3 KB	`9a4835582882…`
science-advances-v09-80/FIGURE_PACKAGE_v09_80.md	Documentation / figure	present_science_advances_v09_80_staging	4.5 KB	`f0e218ac4d26…`
`science-advances-v09-80/figures/Figure_1_evidence_governance_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	49.3 KB	`a428f9154fdd…`
`science-advances-v09-80/figures/Figure_1_evidence_governance_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	893.2 KB	`e57f5b3c1fa2…`
`science-advances-v09-80/figures/Figure_1_evidence_governance_v09_80.svg` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	136.0 KB	`a333562e1efd…`
`science-advances-v09-80/figures/Figure_1_evidence_governance_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.7 MB	`93ac75779c36…`
`science-advances-v09-80/figures/Figure_2_dmd_axes_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	283.4 KB	`084e83d59c48…`
`science-advances-v09-80/figures/Figure_2_dmd_axes_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.0 MB	`cc8618befb84…`
`science-advances-v09-80/figures/Figure_2_dmd_axes_v09_80.svg` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	584.0 KB	`dd4cfb50ef55…`
`science-advances-v09-80/figures/Figure_2_dmd_axes_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	2.0 MB	`9cd812ee7de3…`
`science-advances-v09-80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	68.4 KB	`ce64b49c2442…`
`science-advances-v09-80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.0 MB	`9e6b733b2b91…`
science-advances-v09-80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.svg	Documentation / figure	present_science_advances_v09_80_staging	231.7 KB	`e01bdb8b7f1c…`
`science-advances-v09-80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	2.4 MB	`05cf9b7eb98b…`
`science-advances-v09-80/figures/Figure_4_boundary_holdout_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	59.9 KB	`fd6a22fdc205…`
`science-advances-v09-80/figures/Figure_4_boundary_holdout_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.1 MB	`c5f4353feacc…`
`science-advances-v09-80/figures/Figure_4_boundary_holdout_v09_80.svg` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	98.0 KB	`8247c747b42b…`
`science-advances-v09-80/figures/Figure_4_boundary_holdout_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.7 MB	`acc86728dc56…`
`science-advances-v09-80/figures/Figure_5_disease_module_matrix_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	51.5 KB	`b2d5788011c7…`
`science-advances-v09-80/figures/Figure_5_disease_module_matrix_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	814.7 KB	`5c90741e9600…`
`science-advances-v09-80/figures/Figure_5_disease_module_matrix_v09_80.svg` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	140.4 KB	`53ba69155d5c…`
`science-advances-v09-80/figures/Figure_5_disease_module_matrix_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.6 MB	`9e885bc64d1c…`
`science-advances-v09-80/figures/Figure_6_single_cell_extensions_v09_80.pdf` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	56.2 KB	`63128d10f020…`
`science-advances-v09-80/figures/Figure_6_single_cell_extensions_v09_80.png` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	668.6 KB	`5bf7418cb296…`
`science-advances-v09-80/figures/Figure_6_single_cell_extensions_v09_80.svg` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	132.7 KB	`df020038cef1…`
`science-advances-v09-80/figures/Figure_6_single_cell_extensions_v09_80.tiff` Locate in portable release	Documentation / figure	RO-Crate only; direct site asset excluded	1.3 MB	`f47e51fbae3f…`
science-advances-v09-80/MAIN_FIGURE_CAPTION_BOOK_v09_80.md	Documentation / figure	present_science_advances_v09_80_staging	7.8 KB	`0a3a954d95bb…`
science-advances-v09-80/MAIN_FIGURE_LATEX_INCLUDE_v09_80.tex	Documentation / figure	present_science_advances_v09_80_staging	7.9 KB	`7ce61c2ecd51…`
science-advances-v09-80/NMD_VCell_ScienceAdvances_All_Main_Figure_Index_v09_80.md	Documentation / figure	present_science_advances_v09_80_staging	3.6 KB	`8ea3e715fa30…`
science-advances-v09-80/NMD_VCell_ScienceAdvances_Manuscript_v09_80_FIGURE3_AUDIT_MATRIX_SYNCED.md	Documentation / figure	present_science_advances_v09_80_staging	45.4 KB	`5851f7c9bb3b…`
science-advances-v09-80/README.md	Documentation / figure	present_science_advances_v09_80_staging	1,016 B	`57073dc9f7e6…`
science-advances-v09-80/results/v09_80_caption_claim_alignment.tsv	Reusable table	present_science_advances_v09_80_staging	2.1 KB	`81e889fbecba…`
science-advances-v09-80/results/v09_80_figure_table_trace_status.tsv	Reusable table	present_science_advances_v09_80_staging	593 B	`0706bc5fe42b…`
science-advances-v09-80/results/v09_80_figure_table_trace.json	JSON / metadata	present_science_advances_v09_80_staging	43.0 KB	`143bc9e90aac…`
science-advances-v09-80/results/v09_80_figure3_install_diff.tsv	Reusable table	present_science_advances_v09_80_staging	3.9 KB	`16680bc751e3…`
science-advances-v09-80/results/v09_80_main_figure_file_manifest.tsv	Reusable table	present_science_advances_v09_80_staging	12.9 KB	`ae70161153a7…`
science-advances-v09-80/results/v09_80_manuscript_callout_audit.tsv	Reusable table	present_science_advances_v09_80_staging	961 B	`161783532336…`
science-advances-v09-80/results/v09_80_qc_summary.tsv	Reusable table	present_science_advances_v09_80_staging	444 B	`7f11fee334b0…`
science-advances-v09-80/results/v09_80_submission_gate_matrix.tsv	Reusable table	present_science_advances_v09_80_staging	1.8 KB	`e43cb9d3e856…`
science-advances-v09-80/science_advances_v09_80_packet_manifest.json	JSON / metadata	present_science_advances_v09_80_staging	9.7 KB	`a4ccd79430a1…`
science-advances-v09-80/V09_80_FIGURE3_AUDIT_MATRIX_INSTALLED_ALL_MAIN_PACKET_REPORT.md	Documentation / figure	present_science_advances_v09_80_staging	2.3 KB	`0909c70efaed…`
science-advances-v09-80/v09_80_manifest.json	JSON / metadata	present_science_advances_v09_80_staging	8.5 KB	`49c5ce7715e0…`
signature_summary.tsv	Reusable table	present	1.1 KB	`6e1b8756d4c4…`
source_pairwise_concordance.tsv	Reusable table	present	2.1 KB	`4d11035547f9…`
stage4_16i_gate_summary_for_resource.tsv	Reusable table	present	1.4 KB	`8bab6229fb79…`
stage4_16i_negative_endpoint_summary.tsv	Reusable table	present	1.9 KB	`1fbdb6c48f65…`
supplementary_figure_s13_sampling_coverage_sensitivity_v21.pdf	Documentation / figure	present	87.1 KB	`3e5efacec07f…`
supplementary_figure_s14_legend_v22.md	Documentation / figure	present	922 B	`6dcbdc451b2c…`
supplementary_figure_s14_repeated_fold_stability_v22.pdf	Documentation / figure	present	48.5 KB	`af125696220e…`
supplementary_figure_s14_repeated_fold_stability_v22.svg	Documentation / figure	present	53.5 KB	`fbbe31dbf73c…`
supplementary_s13_panel_a_historical_sampling.tsv	Reusable table	present	177 B	`63219149a8c0…`
supplementary_s13_panel_b_directional_sensitivity.tsv	Reusable table	present	607 B	`7de11f63ece3…`
supplementary_s13_panel_b_fold_counts.tsv	Reusable table	present	51 B	`dd3a130f84ee…`
supplementary_s13_panel_c_coverage_gates.tsv	Reusable table	present	251 B	`e8fa4d4f521c…`
supplementary_s13_panel_d_pre_model_selection.tsv	Reusable table	present	3.8 KB	`7284faeee5d0…`
supplementary_s13_panel_e_reliability_trends.tsv	Reusable table	present	3.8 KB	`004db29c7954…`
`supplementary_s13_panel_f_target_level_effects.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	214.9 KB	`ef38eb8c5c71…`
`target_measurement_reliability.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	392.2 KB	`87ec00805b65…`
tier_multiverse_summary.tsv	Reusable table	present	2.9 KB	`60cc4b12e90e…`
v2_vs_v1_feature_comparison.tsv	Reusable table	present	1.7 KB	`ced85776cc21…`
v21_coverage_gates.tsv	Reusable table	present	254 B	`934d3e4822b4…`
v21_coverage_logistic_coefficients.tsv	Reusable table	present	2.1 KB	`218a0ae85b93…`
v21_coverage_summary.tsv	Reusable table	present	7.1 KB	`ec1614815899…`
`v21_coverage_target_universe.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	593.1 KB	`bb7f5b9444de…`
v21_h1_h2_verification.tsv	Reusable table	present	5.4 KB	`e9ec30e2260e…`
v21_h3_h4_verification.tsv	Reusable table	present	19.3 KB	`a9410ef13bb8…`
v21_historical_aggregate_gates.tsv	Reusable table	present	369 B	`be60af0271a9…`
v21_historical_aggregate_summary.tsv	Reusable table	present	369 B	`e8b83ec32fb2…`
v21_historical_aggregate_tests.tsv	Reusable table	present	857 B	`9c2500603a6a…`
v21_historical_target_coverage.tsv	Reusable table	present	61.3 KB	`51b5e6d2cd39…`
`v21_historical_target_scores.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	317.1 KB	`919093def2ea…`
v21_primary_feature_provenance.tsv	Reusable table	present	5.4 KB	`f6f17c9e0922…`
v21_primary_inner_cv.tsv	Reusable table	present	1.9 KB	`a0b757213573…`
v21_primary_model_gates.tsv	Reusable table	present	599 B	`39a9d7b4cead…`
v21_primary_model_summary.tsv	Reusable table	present	1.1 KB	`269bb2f89047…`
v21_primary_outer_folds.tsv	Reusable table	present	76.5 KB	`b8f1bf572a88…`
v21_primary_target_scores.tsv	Reusable table	present	1.8 MB	`02ef6145b6eb…`
v21_primary_tests.tsv	Reusable table	present	3.0 KB	`e21b4b83588c…`
v21_reliability_assignments.tsv	Reusable table	present	201.0 KB	`29e07dd651ae…`
v21_reliability_cutpoints.tsv	Reusable table	present	623 B	`82b6beb48ec1…`
`v21_reliability_effect_targets.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	777.2 KB	`eaec44e0104a…`
v21_reliability_gates.tsv	Reusable table	present	854 B	`c902708ee4c8…`
v21_reliability_stratified_effects.tsv	Reusable table	present	11.9 KB	`782e4ebaf410…`
v21_reliability_trends.tsv	Reusable table	present	4.0 KB	`6bcb173d46ea…`
v21_unbalanced_model_summary.tsv	Reusable table	present	1.1 KB	`01a55db95291…`
v21_unbalanced_outer_folds.tsv	Reusable table	present	76.5 KB	`12201365dd5e…`
v21_unbalanced_tests.tsv	Reusable table	present	3.0 KB	`fc8c60f2d9b1…`
v22_repeat_fold_assignment_pairwise.tsv	Reusable table	present	12.1 KB	`7e14d22a7c48…`
v22_repeat_fold_counts.tsv	Reusable table	present	1.5 KB	`7be9607f9545…`
v22_repeat_independent_verification.tsv	Reusable table	present	12.5 KB	`353c16a047a5…`
v22_repeat_joint_uncertainty.tsv	Reusable table	present	771 B	`376affea67bb…`
v22_repeat_metric_distributions.tsv	Reusable table	present	3.1 KB	`45b73a81fec7…`
v22_repeat_model_summaries.tsv	Reusable table	present	19.0 KB	`67f074ea6af3…`
v22_repeat_primary_metrics.tsv	Reusable table	present	6.0 KB	`f10d00ac433a…`
v22_repeat_selected_alphas.tsv	Reusable table	present	1.8 KB	`560642228a9d…`
v22_repeat_stability_gates.tsv	Reusable table	present	489 B	`1210337e051f…`
`v22_repeat_target_effect_stability.tsv` Locate in portable release	Reusable table	RO-Crate only; direct site asset excluded	733.7 KB	`9d701b25ad68…`
v24_candidate_all_genes_splitpipe112.tsv	Reusable table	present	8.5 MB	`2a144c39adb1…`
V24_EVIDENCE_TRANSITION.md	Documentation / figure	present	648 B	`8abb156a8b34…`
v24_gene_column_exceptions.tsv	Reusable table	present	333 B	`ec258ebb7ac9…`
v24_gene_column_identity_gates.tsv	Reusable table	present	1.2 KB	`3a225d91c498…`
v24_gene_column_identity_summary.json	JSON / metadata	present	2.4 KB	`2d2cc1ea68db…`
v24_gene_column_identity_verification_checks.tsv	Reusable table	present	1.0 KB	`5aa4a11f500e…`
v24_gene_column_identity_verification_summary.json	JSON / metadata	present	301 B	`eb846cd34424…`
v24_gene_column_source_assertions.tsv	Reusable table	present	2.3 KB	`4e1746715d8f…`
v24_gene_column_source_manifest.tsv	Reusable table	present	4.0 KB	`9422edbdd2b0…`
v24_guide_added_public_sequence_counts.tsv	Reusable table	present	125.4 KB	`3f2c60b7cf78…`
v24_guide_candidate_sequence_count_conservation.tsv	Reusable table	present	47.9 KB	`21aea3193d23…`
v24_guide_paired_run_reference_deltas.tsv	Reusable table	present	2.2 KB	`8b51bf3ccab6…`
v24_guide_reference_sensitivity_gates.tsv	Reusable table	present	741 B	`054f5ad319d0…`
v24_guide_reference_sensitivity_summary.json	JSON / metadata	present	1.1 KB	`c4c4b76c07f3…`
v24_matrix_column_62711_observation.tsv	Reusable table	present	409 B	`96d3bebb226a…`
v24_matrix_column_scan_metrics.tsv	Reusable table	present	562 B	`20c46ff86ab6…`
v24_matrix_column_structure_gates.tsv	Reusable table	present	1.6 KB	`c59b444fbada…`
v24_matrix_column_structure_summary.json	JSON / metadata	present	2.2 KB	`8b1a68cb38cd…`
v24_matrix_column_structure_verification_checks.tsv	Reusable table	present	1.1 KB	`f053093cdfad…`
v24_matrix_column_structure_verification_summary.json	JSON / metadata	present	283 B	`ad4261c987e8…`
v24_matrix_content_sha256.txt	Documentation / figure	present	65 B	`cd0ab20590bb…`
v24_matrix_range_manifest.tsv	Reusable table	present	991 B	`1e2ab02f052e…`
v24_matrix_terminal_coordinate.tsv	Reusable table	present	73 B	`44a0031f4722…`
v24r1_claim_figure_alignment_audit.tsv	Reusable table	present	651 B	`2bb737104812…`
v24r1_integrity_corrected_internal_status.md	Documentation / figure	present	2.3 KB	`5effdb8db1a2…`
v24r1_manuscript_review_candidate.md	Documentation / figure	present	34.0 KB	`fa0312754d26…`
v24r1_review_package_audit.tsv	Reusable table	present	486 B	`639a20b6759e…`
v24r1_review_package_manifest.tsv	Reusable table	present	2.0 KB	`4118b7f36a2f…`
validate_external_candidate_evidence_import.py	Code	present	7.2 KB	`684740905244…`

The current Workbench overlay archive is intentionally omitted from this self-contained ledger table to avoid embedding the archive's own SHA-256 inside a file that is packaged into that same archive. Its final identity is locked in overlay_archive_identity.json and the release file registry.