NMD-VCell Research Workbench Module: Validate / registry · evidence-to-experiment workflow NMD = neuromuscular disorders
Research evidence only 21 observed HepG2 perturbations 0 independent DMD replications Boundary & release
Observed HepG2 perturbations with limited external myogenic context No validated DMD perturbation prediction v1.0.0-database-resource Frozen 25 Jul 2026 Schema 1.1 Model ridge-safe-v2.3 Benchmark repeated-fold-v2.2 Build EA-20260729-20 DOI pending Open evidence boundary →

Benchmark center

Four benchmark questions, four independent routes.

The same-context audit, external aggregate transfer, G0–G7 generalization contract and VCC 2026 readiness audit are separated so their denominators and claim boundaries cannot drift into one another.

Current model result: The model slightly improves average prediction error inside the HepG2 dataset, but it does not reliably recover response direction and does not transfer to an external perturbation dataset.

Generalization at a glanceExecution stops before unseen family, donor, state and DMD disease-line testsThese lanes are separate tasks, not a cumulative model score.

Unified benchmark matrix

Executed results are separated from future tasks

No single aggregate score
Open the exact benchmark execution matrix
TaskEvaluation unitCurrent dataExecutedCurrent result
G0 · same-context random holdoutHeld-out HepG2 targetsAvailableYesSmall RMSE gain; strict gate 0/16
G1 · unseen perturbation55 external target aggregatesDiagnostic onlyPartialNo directional-transfer support
G2–G5 · family, donor, state, laboratoryFully held-out contextAbsent or incompatibleNoNot assessed
G6 · unseen disease lineIndependent DMD modelNo perturbation outcomesNoNot assessed
G7 · unseen modality / combinationsKO, OE or observed doublesCalibration references onlyNoNot assessed
01 · Same-context

Core HepG2 benchmark

Repeated-fold error, raw direction, residual structure and the 16 frozen strict outcomes.

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02 · External aggregate

External-transfer diagnostic

Formula-aligned aggregate metrics on 55 Frangieh targets; no directional-transfer support.

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03 · OOD matrix

G0–G7 generalization ladder

Unseen perturbation, family, donor, state, laboratory, disease and modality are reported independently.

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04 · Future-task audit

VCC 2026 readiness

Infrastructure gap matrix, official-source watch and task-binding locks before launch.

Open VCC readiness →
Boundary. Results on one route do not upgrade another. The external 55-target object is not a VCC score, and VCC readiness is not task compatibility.