{
  "artifact_id": "v09_80_figure3_audit_matrix_installed_all_main_packet",
  "created_utc": "2026-08-21T07:44:29.454441+00:00",
  "decision": "FIGURE3_AUDIT_MATRIX_INSTALLED_ALL_MAIN_PACKET_READY__CENTRAL_MANUSCRIPT_OVERWRITE_NOT_APPLIED",
  "script": "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/scripts/build_v09_80_figure3_audit_matrix_installed_packet.py",
  "script_sha256": "56b0acb20246b29296b73db4ceb5273c6f11374492e3db03881e07253e35dd28",
  "output_root": "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80",
  "source_packets": {
    "carried_forward_all_main_packet": "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_38/figure1_2_3_5_6_synced_all_main_packet_v09_38",
    "installed_figure3_packet": "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_79/figure3_audit_matrix_redraw_v09_79"
  },
  "outputs": [
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/MAIN_FIGURE_CAPTION_BOOK_v09_80.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/MAIN_FIGURE_LATEX_INCLUDE_v09_80.tex",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/NMD_VCell_ScienceAdvances_Manuscript_v09_80_FIGURE3_AUDIT_MATRIX_SYNCED.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/NMD_VCell_ScienceAdvances_All_Main_Figure_Index_v09_80.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/FIGURE_PACKAGE_v09_80.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/V09_80_FIGURE3_AUDIT_MATRIX_INSTALLED_ALL_MAIN_PACKET_REPORT.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/manuscript_patch/FIGURE_3_CAPTION_PATCH_v09_80.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/manuscript_patch/FIGURE_3_RESULTS_SOURCE_BINDING_PATCH_v09_80.md",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_main_figure_file_manifest.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_caption_claim_alignment.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_manuscript_callout_audit.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_figure_table_trace_status.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_submission_gate_matrix.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_figure3_install_diff.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_qc_summary.tsv",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/results/v09_80_figure_table_trace.json",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_1_evidence_governance_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_1_evidence_governance_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_1_evidence_governance_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_1_evidence_governance_v09_80.tiff",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_2_dmd_axes_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_2_dmd_axes_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_2_dmd_axes_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_2_dmd_axes_v09_80.tiff",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_3_candidate_assignment_audit_matrix_v09_80.tiff",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_4_boundary_holdout_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_4_boundary_holdout_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_4_boundary_holdout_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_4_boundary_holdout_v09_80.tiff",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_5_disease_module_matrix_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_5_disease_module_matrix_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_5_disease_module_matrix_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_5_disease_module_matrix_v09_80.tiff",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_6_single_cell_extensions_v09_80.pdf",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_6_single_cell_extensions_v09_80.png",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_6_single_cell_extensions_v09_80.svg",
    "neuromuscular_virtual_cell/curated_v09_if10_upgrade/sa_transfer_protocol_v09_80/figure3_audit_matrix_installed_all_main_packet_v09_80/figures/Figure_6_single_cell_extensions_v09_80.tiff"
  ],
  "gate_status_counts": {
    "BLOCKED": 1,
    "NOT_APPLIED": 1,
    "PASS": 7
  },
  "qc_status_counts": {
    "PASS": 4
  }
}