NMD-VCell Disease Virtual Cell Platform Specify a cell-state question, inspect computability, and design the missing test Module: Predict · evidence-to-experiment workflow NMD = neuromuscular disorders

Current limit: the site can compare existing evidence, but no candidate has yet been independently repeated in a DMD muscle model.

Research evidence only 21 prioritized candidate perturbation records 2,160 benchmark perturbation targets 0 independent DMD replications Boundary & release
21 Workbench candidates are surfaced for consideration, not ranked as validated targets 2,160 target-level perturbation responses form the frozen HepG2 benchmark substrate No validated DMD perturbation prediction v1.0.0-database-resource Frozen 25 Jul 2026 Schema 1.1 Model ridge-safe-v2.3 Benchmark repeated-fold-v2.2 Build EA-20260730-42 DOI pending Open evidence boundary →

Model Card Audit

Same-context perturbation baseline

This card states exactly what the model was allowed to learn, predict, evaluate and claim in this release. Architecture labels and external publications do not create local DMD prediction performance.

NMDVCELL-RIDGE-SAFE-2.3executed limited same context only

Input, output and current result

InputTraining folds of processed HepG2 perturbation-response deltas
OutputHeld-out 2,000-feature mean response vector
Training context
One processed HepG2 CRISPRi assay context
Held-out task
Repeated target-level balanced folds · G0
Current result
Small average-error improvement; response direction is not reliable.
Permitted use
Same-assay technical baseline and benchmark control only

Audit axes

The model is reviewed across twelve required axes.

No scalar model score
Permanent baselines
  • zero change
  • training-response mean
  • ridge residual
Primary metrics
  • RMSE
  • raw cosine
  • residual cosine
Leakage control

same-task split documented; disease-transfer grouping not applicable

Calibration / OOD

not_calibrated_for_dmd_response · not_validated_for_dmd_muscle_or_patient_context

Claim boundary

What this model card does not authorize

Unlock rule: Beat simple baselines on harmonized external cell-level perturbation truth before any transport claim. Automatic unlock is disabled.