source_pattern	learn	borrow	apply_to_nmd_vcell	current_status	acceptance_gate
Arc STATE and Virtual Cell Challenge	A model claim must be bound to task, split, hidden labels, frozen submission and permanent simple baselines.	Prediction-freeze, hidden-test and baseline-retention rules.	Create a DMD Prospective Benchmark where Study Card, Prediction Card and Outcome object are separate immutable records.	P0_INFRASTRUCTURE_READY_P1_LOCKED	No DMD prediction label is shown until a timestamped prediction exists before outcome access and simple baselines run on the same split.
CZI Virtual Cells Platform	Data, model, benchmark and inference should use one ModelRun contract across web, CLI and local execution.	Model adapter, run log, dataset digest, split manifest and reusable benchmark package.	Standardize zero, train-mean, nearest-neighbour, ridge and one future population model behind a shared ModelRun object.	MODEL_CARD_ONLY_FOR_ADVANCED_DMD_MODELS	Every run records model id, commit, container digest, data SHA, split id, seed, status, metrics and failure reason.
CELLxGENE and Vitessce-style browsers	A Cell Browser must let users operate real cell objects, not only read concept cards.	Dataset, donor, disease, state, batch, expression, DE, cell-proportion and spatial-neighbour filters.	Upgrade Cell Browser v1 around real DMD scRNA/snRNA/spatial data with donor-level pseudobulk as the default statistical unit.	CONTEXT_MAP_NOT_CELL_LEVEL_BROWSER	At least two DMD datasets can be filtered by donor and disease, with expression, cell count, pseudobulk DE and exportable selections.
Open Targets and DepMap	Long-lived platforms are entity graphs plus stable programmatic file indices, not only pages.	Entity relation graph, API version metadata, file index, historical releases and provenance by source.	Expose Gene, Dataset, Comparison, Study, ModelRun, Prediction and Outcome as linked objects under one release context.	PARTIAL_OBJECT_GRAPH_RELEASED	Each page answers: what object is studied, what evidence supports it, and which next object would change the conclusion.
VCell mechanism simulation platform	Mechanistic models separate model definition, parameters, solver, simulation run and result object.	Solver/run/result separation and explicit parameter documentation.	Keep Computability Gate, ModelRun and future mechanistic simulation objects distinct so the name virtual cell does not imply unavailable numerical simulation.	COMPUTABILITY_GATE_ONLY	UI never presents evidence checks as simulation output; future solver objects must cite equations, parameters, run logs and result files.
CLUE/CMap service continuity lesson	A valuable scientific portal can lose utility if data are only reachable through an active website.	Portable archive, checksum ledger, mirror plan, historical manifest and exit strategy.	Keep RO-Crate, release manifest, file registry, checksums and deprecated archive policy as first-class release objects.	PORTABLE_RELEASE_OBJECTS_PRESENT_FORMAL_DOI_PENDING	A release can be reconstructed from manifest, checksums, schemas and archived files without relying on the interactive site.