{
  "resource_release": "v1.0.0-database-resource",
  "schema_version": "1.1",
  "interface_build": "EA-20260729-20",
  "evidence_freeze": "2026-07-25",
  "created_utc": "2026-07-27T02:46:00+00:00",
  "authority_source": "deploy/nmd-vcell-site/public/resource",
  "deposit_status": "not_deposited_external_action_pending",
  "formal_v1_release": false,
  "submission_ready": false,
  "current_required_archives": [
    {
      "layer": "analysis_core",
      "object_id": "FILE:CORE:v0.8.1:v24r1:20260722",
      "filename": "nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz",
      "size_bytes": 9677910,
      "sha256": "b88a3b9f1ae44b48d6ea3c2a568626229cc93f94d539b8ea30f55534aae41f36"
    },
    {
      "layer": "evidence_atlas_overlay",
      "object_id": "FILE:OVERLAY:v1.0.0-database-resource:stage5.69:20260729",
      "filename": "nmd_vcell_research_workbench_overlay_v1.0.0_database_resource_20260729_stage5_69.tar.gz",
      "size_bytes": 2703227,
      "sha256": "95299f65c0e4993f9c83b9b10f1bedc15f0e0cc9f2d3b75bd3433793072fcd49"
    }
  ],
  "current_required_archive_paths": [
    "downloads/nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz",
    "downloads/nmd_vcell_research_workbench_overlay_v1.0.0_database_resource_20260729_stage5_69.tar.gz"
  ],
  "supporting_public_object_count": 42,
  "supporting_public_objects_by_group": {
    "identity_and_quality": [
      {
        "path": "api/v1.1/release_manifest.json",
        "size_bytes": 38263,
        "sha256": "dd13cf46f34c3122792b17b073f812b17f0d27e91dca7a193e89cca3e1ca4d93"
      },
      {
        "path": "api/v1.1/v1_release_gate.json",
        "size_bytes": 5800,
        "sha256": "e8b863cfb585f3026f8ad97549f137f3a4bb1457c53f03efbce08ceb1c017c73"
      },
      {
        "path": "api/v1.1/route_manifest.json",
        "size_bytes": 25676,
        "sha256": "9c35911c200719fe4b69e9764195afc0d5f320959c00d6b9abd231cb45c128cc"
      },
      {
        "path": "api/v1.1/site_quality_status.json",
        "size_bytes": 1623,
        "sha256": "9960caad4db6b8cc94a958230319ed46948953dc2f207c18d3b3e01735fb9c8f"
      }
    ],
    "schema_and_api": [
      {
        "path": "api/v1.1/openapi.json",
        "size_bytes": 104399,
        "sha256": "5e508c1b0247c65be4cff4a5a77b36b2ab1c92b1c41bcbd18815b70c1c8b2a1a"
      },
      {
        "path": "api/v1.3/research-objects/registry.json",
        "size_bytes": 13705,
        "sha256": "9e8cb5be324bb5eb6ba44ea7731f561cf4f45b88cad58d62bf15f6765bec2b9b"
      },
      {
        "path": "downloads/nmd_vcell_data_dictionary_schema_1.1.tsv",
        "size_bytes": 61559,
        "sha256": "745d99199fcd2a6ee72d7a2370ec599ba904be0695a94bb6472c8e3451c373a0"
      },
      {
        "path": "downloads/prediction_card.schema.json",
        "size_bytes": 1594,
        "sha256": "5aa6ad91a833abc90c5a3643bfa23adc18b6244f453ed6193d2e29ad139d5b67"
      },
      {
        "path": "downloads/outcome_board.schema.json",
        "size_bytes": 1550,
        "sha256": "b6e12a9449bf8ec847f164776265729941b7b6a562cb5fbef358d38ccc23b165"
      }
    ],
    "external_gate_inputs": [
      {
        "path": "api/v1.1/v1_external_authorization_dossier.json",
        "size_bytes": 5011,
        "sha256": "5facbf94b52736cc2fcb45ffe10937073a8328b1dde71f16f91b2926ad5a119b"
      },
      {
        "path": "downloads/v1_authorization_checklist.tsv",
        "size_bytes": 721,
        "sha256": "6eac20a65aa3dad6bc73c273c04ba5ee9c64ac6ab5f3c1beb5f6d9b41010a0b7"
      },
      {
        "path": "downloads/v1_licence_maintainer_metadata_template.tsv",
        "size_bytes": 1106,
        "sha256": "9e79e3997b7b8bc1ecfdfdbb1c03f5f423efc920195d551a7e1fadfcea555b32"
      },
      {
        "path": "downloads/v1_external_gate_input_template.json",
        "size_bytes": 2048,
        "sha256": "3fd3ebc894305f8102584ed282547a4f41d65b1db59156a314b39fc67fcd9a54"
      },
      {
        "path": "downloads/validate_v1_external_gates.py",
        "size_bytes": 8235,
        "sha256": "c3e952a313b742b768dca1361b295f59748f9dbd8f3cb6e97668bd5bc9f7382d"
      }
    ],
    "locked_prediction_scaffolds": [
      {
        "path": "api/v1.1/prediction_registry.json",
        "size_bytes": 2175,
        "sha256": "520327fde65c3bdf02dd2fee7ebaef2820effeb8b0c9110d886da22d6b79b49d"
      }
    ],
    "supporting_public_object": [
      {
        "path": "ro-crate-metadata.json",
        "size_bytes": 2717,
        "sha256": "0ffafd0a383eafd381077f0b63a630444ffa060b76a9d77046393414f1d6b7de"
      },
      {
        "path": "codemeta.json",
        "size_bytes": 1054,
        "sha256": "c7663b595cae77432ea29afbc511d62bb2327ec20db34bf1b5e0357c3c1efdb2"
      },
      {
        "path": "downloads/external_validation_import_template.json",
        "size_bytes": 1131,
        "sha256": "244032575309ab295dfcd67e4b2dd1eadc239ad9d62caae10e9ca547002d8212"
      },
      {
        "path": "downloads/v1_release_handoff_checklist.tsv",
        "size_bytes": 1515,
        "sha256": "e1780de326eb9af5c2796c0e18e9b75a604f599737953feb41234b67c3277fb2"
      },
      {
        "path": "api/v1.1/deprecated_archive_exception_registry.json",
        "size_bytes": 1862,
        "sha256": "58f57c18664a540f2df97c9c82bf37884c0ec05db08e755b0541ed89fec38cc2"
      },
      {
        "path": "downloads/deprecated_archive_exception_registry.tsv",
        "size_bytes": 3326,
        "sha256": "77ae93b5ce252d9154d6a8514c47b7c696f6f082c4d3b477f8e44e81ecd81b94"
      },
      {
        "path": "qa-status.html",
        "size_bytes": 8569,
        "sha256": "193beef5fb42f894680dae5650b42a8193395420a565b99d5708e31873d6e504"
      },
      {
        "path": "sitemap.xml",
        "size_bytes": 10414,
        "sha256": "191b574db702f1183784655b2d5e15dd2ffc19e18d767f6f67fb0329c06eead0"
      },
      {
        "path": "api/v1.1/site_index.json",
        "size_bytes": 7927,
        "sha256": "2a82bfdd156b8570ea5a8be2ee56f53e2b4d8dd1ace73370d99b7658ac481767"
      },
      {
        "path": "v1-deposit.html",
        "size_bytes": 10732,
        "sha256": "21497f3d04a7862d57c7554fe644172064ae32ab2790e5fe398af9c1df697411"
      },
      {
        "path": "api/v1.1/v1_deposit_quick_view.json",
        "size_bytes": 11169,
        "sha256": "a5884eb77eb5f923bdb94751e71fba8621723243995b560132fd600248fe6129"
      },
      {
        "path": "downloads/v1_deposit_quick_view.tsv",
        "size_bytes": 7964,
        "sha256": "4c2867555b6c49be88f163e7bded3f72700745a4be2311661ba5c65e4304e176"
      }
    ],
    "human_readable_docs": [
      {
        "path": "downloads/DATABASE_PAPER_READINESS.md",
        "size_bytes": 3164,
        "sha256": "508ad9a560400ef772b1d9bf8ba5a7d540d8ab7fd229a516c2c33c001f628154"
      },
      {
        "path": "downloads/NAR_DATABASE_CHECKLIST.md",
        "size_bytes": 1128,
        "sha256": "e27705f36fa8b5cfdcabb9f6d01935da2017c8fbd2156e2eea05055b3eb2d572"
      },
      {
        "path": "downloads/DATA_AVAILABILITY.md",
        "size_bytes": 796,
        "sha256": "c304a8cf6404d206641520a7b1c90bab03c6675e53af83c40b992c7299358c60"
      },
      {
        "path": "downloads/MAINTENANCE_POLICY.md",
        "size_bytes": 736,
        "sha256": "5d6d403079227c3aa85b154625c0077403c77a9c64e84533ac6ae6f1f212480f"
      },
      {
        "path": "downloads/VERSIONING_POLICY.md",
        "size_bytes": 767,
        "sha256": "06d630263827ef80e49d49e346cd8f10f69118307e5a38340b6ada665b324120"
      },
      {
        "path": "downloads/V1_EXTERNAL_AUTHORIZATION_DOSSIER.md",
        "size_bytes": 2850,
        "sha256": "1fc8fa901cf15baf31b8c4a9a538bff4ed19105dc3ddc9d23c228045ae0c2ceb"
      },
      {
        "path": "downloads/V1_EXTERNAL_GATE_HANDOFF.md",
        "size_bytes": 1654,
        "sha256": "9badbac5c1bba0c0c38efd321aad6f1b9f0de3e85816e2d56e802b9feb34ec9a"
      },
      {
        "path": "downloads/DEPRECATED_ARCHIVES.md",
        "size_bytes": 1663,
        "sha256": "a61adb8685ad6f726711c3807e4c8cd82d06d010e57fc94b5630d9faf2efc15d"
      },
      {
        "path": "downloads/STATIC_PREVIEW_AND_ROUTE_POLICY.md",
        "size_bytes": 1007,
        "sha256": "1e765d6815aa64d650e52fc741b98cc0c09c7fbd88917a8cbfc034fb9e023ad9"
      },
      {
        "path": "downloads/SITE_QUALITY_STATUS.md",
        "size_bytes": 853,
        "sha256": "fb6af65e02e67235f3e81b95892dc2fcc91562113c8521f293b67b7997f7f3c9"
      },
      {
        "path": "reviewer-quickstart.html",
        "size_bytes": 10216,
        "sha256": "13b558a1aef584fdf6dffcfc2d2d1fb878f310391755549d95e9ec9eb0cf1dc8"
      },
      {
        "path": "api/v1.1/reviewer_entrypoints.json",
        "size_bytes": 3585,
        "sha256": "99f2afa1969e057c3b10020b16c55b86b9de9fcb07e09bd5f2e6e90dabe0c564"
      },
      {
        "path": "downloads/REVIEWER_QUICKSTART.md",
        "size_bytes": 942,
        "sha256": "9d1417bc0598be6a80271253dd63a1a4e572e27d22ec5304113e4348c142aebd"
      },
      {
        "path": "downloads/reviewer_entrypoints.tsv",
        "size_bytes": 1594,
        "sha256": "26d1983e16ad88a9d7e01dd8032134d17fe03e2a1fdc9fdaa3842941f31cc916"
      },
      {
        "path": "downloads/V1_DEPOSIT_QUICK_VIEW.md",
        "size_bytes": 1351,
        "sha256": "41671250a9954233a2aed54eeed72101d23d8db17a1b9a345a6510a4b01e5b27"
      }
    ]
  },
  "external_gate_inputs": {
    "input_template": "downloads/v1_external_gate_input_template.json",
    "metadata_template": "downloads/v1_licence_maintainer_metadata_template.tsv",
    "authorization_checklist": "downloads/v1_authorization_checklist.tsv",
    "validator": "downloads/validate_v1_external_gates.py"
  },
  "deprecated_archive_policy": {
    "registry": "api/v1.1/deprecated_archive_exception_registry.json",
    "note": "downloads/DEPRECATED_ARCHIVES.md",
    "deprecated_exceptions": [
      {
        "exception_id": "DEPRECATED-OVERLAY-V0.9.9-20260726",
        "pattern_keys": [
          "old_overlay_filename",
          "old_overlay_sha"
        ],
        "filename": "nmd_vcell_research_workbench_overlay_v0.9.9_20260726.tar.gz",
        "sha256": "d146cf63d3aa6909c71727c71d6749b57eb0a6592e47d1d064785046120fc436",
        "size_bytes": 2464834,
        "status": "superseded_historical_inventory_object",
        "current_doi_deposit_object": false,
        "allowed_hit_paths": [
          "api/v1.1/deprecated_archive_exception_registry.json",
          "api/v1.1/v1_deposit_quick_view.json",
          "checksums.sha256",
          "downloads/DEPRECATED_ARCHIVES.md",
          "downloads/deprecated_archive_exception_registry.tsv",
          "downloads/nmd_vcell_release_checksums.sha256",
          "resource_manifest.tsv"
        ],
        "superseded_by": {
          "filename": "nmd_vcell_research_workbench_overlay_v1.0.0_database_resource_20260729_stage5_69.tar.gz",
          "sha256": "95299f65c0e4993f9c83b9b10f1bedc15f0e0cc9f2d3b75bd3433793072fcd49",
          "size_bytes": 2703227,
          "current_doi_deposit_object": true
        },
        "rationale": "The superseded overlay is retained only in checksum-addressed historical inventory for reproducibility. It must not be substituted for the current database-v1 overlay."
      }
    ]
  },
  "do_not_substitute": [
    "Do not substitute superseded historical overlay archives for the current database-v1 overlay.",
    "Do not cite the full checksum inventory as the DOI deposit package without the v1 deposit manifest.",
    "Do not treat prediction scaffolds as validated disease-prediction outputs."
  ],
  "claim_boundary": "v1.0 is a database and evidence-governance release; it is not a validated disease-prediction or clinical decision-support release.",
  "boundary": "This manifest prepares the files that should be deposited or cited for formal v1.0. It does not perform deposition, mint a DOI, approve licences or authorize release wording."
}
