{
  "inventory_schema": "nmd-vcell-research-asset-inventory/1.0",
  "resource_release": "v1.2.0-measured-dmd-evidence",
  "evidence_freeze": "2026-08-03",
  "interface_build": "EA-20260817-57",
  "checked_at": "2026-08-16",
  "generated_by": "scripts/apply-evidence-atlas-product-overlay.mjs",
  "headline": "The workspace contains substantially more research and visual material than the formal website registries expose.",
  "counts": {
    "controlled_public_routes": 161,
    "formally_registered_datasets": 5,
    "model_cards": 5,
    "frozen_model_runs": 6,
    "calibrated_dmd_models": 0,
    "current_curated_main_figures": 9,
    "current_curated_supplementary_figures": 27,
    "current_curated_supplementary_tables": 44,
    "historical_visual_asset_instances": 1707,
    "historical_unique_visual_hashes": 773,
    "public_publication_and_figure_download_assets": 69
  },
  "records": [
    {
      "asset_id": "ASSET-PUBLIC-PRODUCT",
      "asset_class": "PUBLIC_PRODUCT",
      "lifecycle_state": "RELEASED",
      "title": "Controlled public website and typed API",
      "inventory": "161 controlled routes with release, route and checksum manifests",
      "public_entrypoint": "/resource/",
      "source_object": "/resource/api/v1.1/route_manifest.json",
      "current_gap": "A route inventory existed, but research assets, external opportunities and adoption decisions were not presented in one navigable view.",
      "action": "Keep this landscape page in the controlled route and release manifests."
    },
    {
      "asset_id": "ASSET-DATA-MODEL-REGISTRIES",
      "asset_class": "COMPUTABLE_REGISTRIES",
      "lifecycle_state": "RELEASED_LIMITED",
      "title": "Typed dataset, model-card and ModelRun registries",
      "inventory": "5 datasets · 5 model cards · 6 frozen runs · 0 calibrated DMD models",
      "public_entrypoint": "/resource/models/",
      "source_object": "/resource/api/v1.1/model_run_registry.json",
      "current_gap": "The execution ledger is strong, but disease-relevant perturbation outcomes and author-missing feature/metadata files remain absent.",
      "action": "Acquire missing metadata first; evaluate new adapters on compatible non-DMD benchmarks before any disease claim."
    },
    {
      "asset_id": "ASSET-CURATED-V06-PUBLICATION",
      "asset_class": "PUBLICATION_PACKAGE",
      "lifecycle_state": "CURATED_NOT_SUBMISSION_READY",
      "title": "Curated v06 manuscript, main figures and supplement",
      "inventory": "9 main figures · 27 supplementary figures · 44 supplementary tables · 36 traced figure artifacts · 16 traced key numeric claims",
      "public_entrypoint": "/resource/downloads/multidisease-v02/NMD_VCell_NAR_Manuscript_curated_v06_WORKING.pdf",
      "source_object": "/resource/downloads/multidisease-v02/CURATED_V06_VERIFICATION.json",
      "current_gap": "Technical verification passes, while the pre-submission integrity state remains blocked and the package is explicitly working material.",
      "action": "Expose the current package and its verification state without hiding v05 or claiming submission readiness."
    },
    {
      "asset_id": "ASSET-HISTORICAL-VISUAL-LINEAGE",
      "asset_class": "HISTORICAL_VISUAL_LINEAGE",
      "lifecycle_state": "HISTORICAL_PRESERVED",
      "title": "All-version visual asset lineage",
      "inventory": "1,707 visual asset instances · 773 unique SHA-256 values · 1.187 GB audited source lineage",
      "public_entrypoint": "/resource/api/v1.1/research_asset_inventory.json",
      "source_object": "curated_v06/source_registry/ALL_VERSION_VISUAL_ASSET_SUMMARY.json (workspace audit source)",
      "current_gap": "Historical assets were retained in the workspace but were not discoverable from the public product.",
      "action": "Preserve every predecessor and publish selection lineage; do not replace historical assets with only the current render."
    },
    {
      "asset_id": "ASSET-MULTIDISEASE-ATLAS",
      "asset_class": "DISEASE_EVIDENCE",
      "lifecycle_state": "RELEASED_WITH_SCOPE_DIFFERENCES",
      "title": "DMD, FSHD, DM1 and SMA evidence atlas",
      "inventory": "4 disease modules and 10 measured-or-missing cell-context records under one evidence vocabulary",
      "public_entrypoint": "/resource/diseases/",
      "source_object": "/resource/api/v2/diseases/manifest.json",
      "current_gap": "Disease evidence depth differs and cannot be collapsed into a shared predictor or disease ranking.",
      "action": "Extend donor-resolved cell objects only when source metadata and statistical units pass registration."
    },
    {
      "asset_id": "ASSET-DMD-PERTURBATION-OUTCOME",
      "asset_class": "DECISION_CRITICAL_MISSING_ASSET",
      "lifecycle_state": "MISSING",
      "title": "Independent candidate-level DMD perturbation outcomes",
      "inventory": "0/21 governed candidates with qualifying independent DMD perturbation outcomes",
      "public_entrypoint": "/resource/prediction_readiness",
      "source_object": "/resource/api/v1.6/measured-dmd-evidence/candidate-outcome-boundary.json",
      "current_gap": "No released dataset can calibrate a candidate-level DMD response predictor.",
      "action": "Keep DMD perturbation prediction locked; computational expansion cannot manufacture this missing outcomes."
    }
  ],
  "interpretation": "The visible shortage was primarily an indexing and product-organization problem, not wholesale deletion. Historical assets remain preserved; current release objects and missing scientific outcomes must still be distinguished.",
  "claim_boundary": "Asset presence, curation or technical verification does not establish biological validation, model calibration or submission readiness."
}