{
  "universe_schema": "nmd-vcell-data-universe/1.1",
  "audited_at": "2026-09-06",
  "interface_build": "EA-20260817-57",
  "resource_release": "v1.2.0-measured-dmd-evidence",
  "inventory_snapshot": {
    "frozen_at": "2026-09-06",
    "asset_record_count": 126,
    "asset_id_sha256": "6728913b1ca7abe812ec8df9223cdf5aeee8b905d86af5ea51ebdd72b6cb4de8",
    "asset_records_sha256": "6064297cbf81367641b8ff7a7cf25ccd1baa20e6e1835c4f322f671a916bc311",
    "scope": "Frozen public inventory membership and redacted record metadata. Workspace objects created after this snapshot remain unreleased until separately audited; presence is not execution, task qualification or scientific validation."
  },
  "counts": {
    "external_data_families_local": 12,
    "local_analysis_families": 65,
    "local_analysis_files": 881,
    "server_share_top_level_data_families": 80,
    "server_virtual_cell_result_families": 66,
    "server_virtual_cell_result_files": 2278,
    "model_families": 2,
    "model_files": 79,
    "public_api_files": 634,
    "public_api_files_current": 712,
    "post_audit_api_files": 78,
    "source_release_api_files_current": 712,
    "deployment_excluded_api_files": 0,
    "curated_main_figure_files": 36,
    "curated_supplementary_figure_files": 114,
    "curated_supplementary_tables": 44,
    "remote_priority_inventory_records": 28,
    "mapped_asset_records": 126,
    "registered_training_dataset_records": 5,
    "registered_model_runs": 6,
    "analysis_result_families_total": 131,
    "analysis_result_files_total": 3159,
    "layer_counts": {
      "source": 22,
      "server": 34,
      "analysis": 65,
      "model": 2,
      "publication": 1,
      "api": 1,
      "missing": 1
    }
  },
  "value_map": [
    {
      "lane": "Disease context",
      "asset_scope": "12 workspace source families + 80 server families",
      "can_answer": "Which disease, donor, tissue and cell-state contexts are represented well enough to frame a DMD question.",
      "cannot_answer": "Whether one candidate perturbation changes a DMD muscle outcome.",
      "handoff": "Open Disease Atlas or Cell Browser before selecting a perturbation.",
      "route": "/resource/disease/dmd/"
    },
    {
      "lane": "Perturbation substrate",
      "asset_scope": "5 task-audited Dataset Cards",
      "can_answer": "Which observed perturbation substrates and contextual screens are reusable for baseline, transfer or assay design.",
      "cannot_answer": "A calibrated DMD rescue, toxicity or fusion prediction without matched disease-context outcomes.",
      "handoff": "Open Dataset Cards, then ask the target in Virtual Cell.",
      "route": "/resource/datasets/"
    },
    {
      "lane": "Model execution",
      "asset_scope": "6 registered ModelRuns + 2 model asset families",
      "can_answer": "Which model runs executed, which benchmarks are permanent controls and which task gates failed or remain locked.",
      "cannot_answer": "A disease-conditioned counterfactual when the required outcome edge is absent.",
      "handoff": "Open ModelRun Registry or Benchmark Center before interpreting model-like outputs.",
      "route": "/resource/models/"
    },
    {
      "lane": "Truth generation",
      "asset_scope": "Matched DMD candidate outcomes remain the decision-critical missing edge",
      "can_answer": "Which experiment would convert an evidence gap into a reusable outcome object.",
      "cannot_answer": "A positive or negative biological effect before the registered study exists.",
      "handoff": "Use Planner or Study Cards to freeze assay, controls, endpoint and decision rule.",
      "route": "/resource/planner"
    }
  ],
  "quantity_semantics": {
    "storage_presence": "12 workspace source families and 80 top-level /share families are storage-level inventory counts.",
    "analysis_coverage": "65 workspace result families and 66 server result families are analysis-family counts; they are not independent validation counts.",
    "public_mapping": "126 public inventory records summarize assets and collections; 634 API files belong to the 13 August inventory and 78 product-layer API objects were added after that audit. Current total: 712.",
    "task_registry": "5 datasets are audited for a specific computational role and 6 completed runs are registered; these are governed subsets, not totals for all stored data.",
    "prediction_qualification": "No matched candidate-conditioned DMD muscle outcome set currently qualifies a calibrated disease-response predictor."
  },
  "assets": [
    {
      "asset_id": "DATA:GSE133344",
      "layer": "source",
      "title": "CRISPRa single and combination calibration",
      "identifier": "GSE133344",
      "disease": "Non-muscle method calibration",
      "modality": "K562",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "287 perturbations; 112 singles; 132 pairs",
      "public_route": "/resource/datasets/",
      "purpose": "Method calibration only; not muscle/DMD overexpression evidence"
    },
    {
      "asset_id": "DATA:GSE233606",
      "layer": "source",
      "title": "Single-cell DMD induction response",
      "identifier": "GSE233606",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GSE264667",
      "layer": "source",
      "title": "HepG2 TRADE Perturb-seq training substrate",
      "identifier": "GSE264667",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GSE272233",
      "layer": "source",
      "title": "DMD-locus correction transcript reference",
      "identifier": "GSE272233",
      "disease": "Duchenne muscular dystrophy",
      "modality": "Patient-derived and corrected cellular models",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "21 samples; 3 per reported group",
      "public_route": "/resource/datasets/",
      "purpose": "Orthogonal disease-correction reference"
    },
    {
      "asset_id": "DATA:GSE277637",
      "layer": "source",
      "title": "DMD skeletal-muscle organoid single-cell atlas",
      "identifier": "GSE277637",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GSE288958",
      "layer": "source",
      "title": "Human DMD/BMD/control muscle biopsy atlas",
      "identifier": "GSE288958",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GSE293514",
      "layer": "source",
      "title": "Human myoblast fusion perturbation screen",
      "identifier": "GSE293514",
      "disease": "Muscle context; not DMD rescue",
      "modality": "Human myoblast",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "7,197 screen genes; 250 hits; 125 individually validated genes",
      "public_route": "/resource/datasets/",
      "purpose": "Observed healthy-myoblast functional perturbation reference (Stage B0), not DMD replication"
    },
    {
      "asset_id": "DATA:GSE297388",
      "layer": "source",
      "title": "DMD mouse single-cell and spatial atlas",
      "identifier": "GSE297388",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GSE52529",
      "layer": "source",
      "title": "Human myogenic differentiation trajectory",
      "identifier": "GSE52529",
      "disease": "Non-disease trajectory reference",
      "modality": "Primary human skeletal myoblast",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "271 cells",
      "public_route": "/resource/datasets/",
      "purpose": "Unperturbed trajectory reference only"
    },
    {
      "asset_id": "DATA:dmd_donor_pseudobulk_v01",
      "layer": "source",
      "title": "Dmd Donor Pseudobulk V01",
      "identifier": "dmd_donor_pseudobulk_v01",
      "disease": "DMD",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:multidisease_v01",
      "layer": "source",
      "title": "Multidisease V01",
      "identifier": "multidisease_v01",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:multidisease_v02",
      "layer": "source",
      "title": "Multidisease V02",
      "identifier": "multidisease_v02",
      "disease": "Multi-context",
      "modality": "processed biological data",
      "location": "workspace-local",
      "state": "AVAILABLE",
      "scale": "directory-level family",
      "public_route": "/resource/datasets/",
      "purpose": "Source or processed input for a governed NMD-VCell analysis."
    },
    {
      "asset_id": "DATA:GENCODE50",
      "layer": "source",
      "title": "REFERENCE · GENCODE50",
      "identifier": "GENCODE50",
      "disease": "REFERENCE",
      "modality": "transcript_to_hgnc_symbol_mapping",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "1 registered source files",
      "public_route": "/resource/diseases/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE143452",
      "layer": "source",
      "title": "FSHD · GSE143452",
      "identifier": "GSE143452",
      "disease": "FSHD",
      "modality": "patient_myotube_single_nucleus_expression · sample_and_series_metadata",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "2 registered source files",
      "public_route": "/resource/disease/fshd/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE205421",
      "layer": "source",
      "title": "FSHD · GSE205421",
      "identifier": "GSE205421",
      "disease": "FSHD",
      "modality": "dux4_induction_timecourse_raw_counts · dux4_induction_timecourse_tpm",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "3 registered source files",
      "public_route": "/resource/disease/fshd/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE303359",
      "layer": "source",
      "title": "FSHD · GSE303359",
      "identifier": "GSE303359",
      "disease": "FSHD",
      "modality": "membrane_repair_ferroptosis_file_registry · sample_and_series_metadata",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "2 registered source files",
      "public_route": "/resource/disease/fshd/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE127296",
      "layer": "source",
      "title": "DM1 · GSE127296",
      "identifier": "GSE127296",
      "disease": "DM1",
      "modality": "isogenic_repeat_state_expression · isogenic_repeat_state_differential_expression",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "8 registered source files",
      "public_route": "/resource/disease/dm1/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE201255",
      "layer": "source",
      "title": "DM1 · GSE201255",
      "identifier": "GSE201255",
      "disease": "DM1",
      "modality": "patient_muscle_raw_counts · patient_muscle_sample_order",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "4 registered source files",
      "public_route": "/resource/disease/dm1/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE290979",
      "layer": "source",
      "title": "SMA · GSE290979",
      "identifier": "GSE290979",
      "disease": "SMA",
      "modality": "spinal_organoid_disease_and_aso_rescue_counts · sample_and_series_metadata",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "2 registered source files",
      "public_route": "/resource/disease/sma/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE290980",
      "layer": "source",
      "title": "SMA · GSE290980",
      "identifier": "GSE290980",
      "disease": "SMA",
      "modality": "spinal_organoid_single_cell_file_registry · sample_and_series_metadata",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "2 registered source files",
      "public_route": "/resource/disease/sma/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE252128",
      "layer": "source",
      "title": "SMA · GSE252128",
      "identifier": "GSE252128",
      "disease": "SMA",
      "modality": "treated_patient_muscle_gene_counts · treated_patient_muscle_gene_tpm",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "3 registered source files",
      "public_route": "/resource/disease/sma/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "DATA:GSE302774",
      "layer": "source",
      "title": "SMA · GSE302774",
      "identifier": "GSE302774",
      "disease": "SMA",
      "modality": "motor_neuron_smn_loss_differential_expression · induced_neuron_smn_loss_differential_expression",
      "location": "workspace-local registry",
      "state": "AVAILABLE",
      "scale": "3 registered source files",
      "public_route": "/resource/disease/sma/",
      "purpose": "Multi-disease disease-state, rescue or mechanism evidence."
    },
    {
      "asset_id": "RESULT:adam10_operating_characteristics_v087",
      "layer": "analysis",
      "title": "Adam10 Operating Characteristics V087",
      "identifier": "adam10_operating_characteristics_v087",
      "disease": "Cross-context",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:candidate_dmd_statistical_bridge_v02",
      "layer": "analysis",
      "title": "Candidate Dmd Statistical Bridge V02",
      "identifier": "candidate_dmd_statistical_bridge_v02",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cascade-network/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:candidate_pathway_cascade_network_v01",
      "layer": "analysis",
      "title": "Candidate Pathway Cascade Network V01",
      "identifier": "candidate_pathway_cascade_network_v01",
      "disease": "Cross-context",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cascade-network/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:cellspatialfoundation_frozen_preflight_v01",
      "layer": "analysis",
      "title": "Cellspatialfoundation Frozen Preflight V01",
      "identifier": "cellspatialfoundation_frozen_preflight_v01",
      "disease": "Cross-context",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:cellspatialfoundation_gbtissue_gate_v01",
      "layer": "analysis",
      "title": "Cellspatialfoundation Gbtissue Gate V01",
      "identifier": "cellspatialfoundation_gbtissue_gate_v01",
      "disease": "Cross-context",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:cellspatialfoundation_gbtissue_preflight_gse297388_v03",
      "layer": "analysis",
      "title": "Cellspatialfoundation Gbtissue Preflight Gse297388 V03",
      "identifier": "cellspatialfoundation_gbtissue_preflight_gse297388_v03",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:cleanroom_measured_dmd_release_v01",
      "layer": "analysis",
      "title": "Cleanroom Measured Dmd Release V01",
      "identifier": "cleanroom_measured_dmd_release_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_causal_perturbation_outcome_reference_v01",
      "layer": "analysis",
      "title": "DMD causal perturbation outcome reference v01",
      "identifier": "dmd_causal_perturbation_outcome_reference_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_core4_target_panels_20260812",
      "layer": "analysis",
      "title": "Dmd Core4 Target Panels 20260812",
      "identifier": "dmd_core4_target_panels_20260812",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_context_truncation_sensitivity_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Context Truncation Sensitivity V01",
      "identifier": "dmd_nicheformer_context_truncation_sensitivity_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_frozen_embedding_server_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Frozen Embedding Server V01",
      "identifier": "dmd_nicheformer_frozen_embedding_server_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_frozen_embedding_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Frozen Embedding V01",
      "identifier": "dmd_nicheformer_frozen_embedding_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_legacy_ckpt_full_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Legacy Ckpt Full V01",
      "identifier": "dmd_nicheformer_legacy_ckpt_full_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_legacy_ckpt_smoke_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Legacy Ckpt Smoke V01",
      "identifier": "dmd_nicheformer_legacy_ckpt_smoke_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_legacy_input_contract_audit_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Legacy Input Contract Audit V01",
      "identifier": "dmd_nicheformer_legacy_input_contract_audit_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_nicheformer_technology_mean_audit_v01",
      "layer": "analysis",
      "title": "Dmd Nicheformer Technology Mean Audit V01",
      "identifier": "dmd_nicheformer_technology_mean_audit_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_official_checkpoint_intake_server_v01",
      "layer": "analysis",
      "title": "Dmd Official Checkpoint Intake Server V01",
      "identifier": "dmd_official_checkpoint_intake_server_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_official_checkpoint_intake_v01",
      "layer": "analysis",
      "title": "Dmd Official Checkpoint Intake V01",
      "identifier": "dmd_official_checkpoint_intake_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_candidate_triage_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Candidate Triage V01",
      "identifier": "dmd_spatial_candidate_triage_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_backend_comparison_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Backend Comparison V01",
      "identifier": "dmd_spatial_context_backend_comparison_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_backend_comparison_v02_legacy_nicheformer",
      "layer": "analysis",
      "title": "Dmd Spatial Context Backend Comparison V02 Legacy Nicheformer",
      "identifier": "dmd_spatial_context_backend_comparison_v02_legacy_nicheformer",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_condition_geometry_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Condition Geometry V01",
      "identifier": "dmd_spatial_context_condition_geometry_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_condition_geometry_v01_repeat",
      "layer": "analysis",
      "title": "Dmd Spatial Context Condition Geometry V01 Repeat",
      "identifier": "dmd_spatial_context_condition_geometry_v01_repeat",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_embedding_baseline_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Embedding Baseline V01",
      "identifier": "dmd_spatial_context_embedding_baseline_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_gbtissue_gpu_embedding_strict_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Gbtissue Gpu Embedding Strict V01",
      "identifier": "dmd_spatial_context_gbtissue_gpu_embedding_strict_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_gbtissue_gpu_embedding_strict_v01_repeat",
      "layer": "analysis",
      "title": "Dmd Spatial Context Gbtissue Gpu Embedding Strict V01 Repeat",
      "identifier": "dmd_spatial_context_gbtissue_gpu_embedding_strict_v01_repeat",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_gbtissue_gpu_embedding_v02",
      "layer": "analysis",
      "title": "Dmd Spatial Context Gbtissue Gpu Embedding V02",
      "identifier": "dmd_spatial_context_gbtissue_gpu_embedding_v02",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_geometry_bootstrap_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Geometry Bootstrap V01",
      "identifier": "dmd_spatial_context_geometry_bootstrap_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_geometry_bootstrap_v01_repeat",
      "layer": "analysis",
      "title": "Dmd Spatial Context Geometry Bootstrap V01 Repeat",
      "identifier": "dmd_spatial_context_geometry_bootstrap_v01_repeat",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_label_transfer_gate_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Label Transfer Gate V01",
      "identifier": "dmd_spatial_context_label_transfer_gate_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_context_stability_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Context Stability V01",
      "identifier": "dmd_spatial_context_stability_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_spatial_input_readiness_v01",
      "layer": "analysis",
      "title": "Dmd Spatial Input Readiness V01",
      "identifier": "dmd_spatial_input_readiness_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_target_panels_20260812",
      "layer": "analysis",
      "title": "Dmd Target Panels 20260812",
      "identifier": "dmd_target_panels_20260812",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_target_panels_disease_compartments_20260812",
      "layer": "analysis",
      "title": "Dmd Target Panels Disease Compartments 20260812",
      "identifier": "dmd_target_panels_disease_compartments_20260812",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_target_panels_disease_compartments_clean_20260812",
      "layer": "analysis",
      "title": "Dmd Target Panels Disease Compartments Clean 20260812",
      "identifier": "dmd_target_panels_disease_compartments_clean_20260812",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:dmd_vs_wt_target_significance_20260812",
      "layer": "analysis",
      "title": "Dmd Vs Wt Target Significance 20260812",
      "identifier": "dmd_vs_wt_target_significance_20260812",
      "disease": "DMD",
      "modality": "perturbation / target analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:external_dmd_pathway_reversal_v01",
      "layer": "analysis",
      "title": "External Dmd Pathway Reversal V01",
      "identifier": "external_dmd_pathway_reversal_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse233606_single_cell_dmd_induction_v01",
      "layer": "analysis",
      "title": "GSE233606 Single Cell Dmd Induction V01",
      "identifier": "gse233606_single_cell_dmd_induction_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse272233_replicate_aware_reactome_v01",
      "layer": "analysis",
      "title": "GSE272233 Replicate Aware Reactome V01",
      "identifier": "gse272233_replicate_aware_reactome_v01",
      "disease": "Cross-context",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse277637_external_dmd_organoid_validation_v01",
      "layer": "analysis",
      "title": "GSE277637 External Dmd Organoid Validation V01",
      "identifier": "gse277637_external_dmd_organoid_validation_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_analyst_celltype_annotation_v01",
      "layer": "analysis",
      "title": "GSE297388 Analyst Celltype Annotation V01",
      "identifier": "gse297388_analyst_celltype_annotation_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_analyst_celltype_annotation_v02",
      "layer": "analysis",
      "title": "GSE297388 Analyst Celltype Annotation V02",
      "identifier": "gse297388_analyst_celltype_annotation_v02",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_analyst_spatial_deconvolution_v01",
      "layer": "analysis",
      "title": "GSE297388 Analyst Spatial Deconvolution V01",
      "identifier": "gse297388_analyst_spatial_deconvolution_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_analyst_spatial_deconvolution_v02",
      "layer": "analysis",
      "title": "GSE297388 Analyst Spatial Deconvolution V02",
      "identifier": "gse297388_analyst_spatial_deconvolution_v02",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_annotation_source_triage_v01",
      "layer": "analysis",
      "title": "GSE297388 Annotation Source Triage V01",
      "identifier": "gse297388_annotation_source_triage_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_annotation_source_triage_v02",
      "layer": "analysis",
      "title": "GSE297388 Annotation Source Triage V02",
      "identifier": "gse297388_annotation_source_triage_v02",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_author_label_contract_v01",
      "layer": "analysis",
      "title": "GSE297388 Author Label Contract V01",
      "identifier": "gse297388_author_label_contract_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_gbtissue_exploratory_geometry_v01",
      "layer": "analysis",
      "title": "GSE297388 Gbtissue Exploratory Geometry V01",
      "identifier": "gse297388_gbtissue_exploratory_geometry_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_gbtissue_strict_descriptive_release_v01",
      "layer": "analysis",
      "title": "GSE297388 Gbtissue Strict Descriptive Release V01",
      "identifier": "gse297388_gbtissue_strict_descriptive_release_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_gbtissue_strict_ortholog_geometry_v01",
      "layer": "analysis",
      "title": "GSE297388 Gbtissue Strict Ortholog Geometry V01",
      "identifier": "gse297388_gbtissue_strict_ortholog_geometry_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_gbtissue_strict_ortholog_stability_v01",
      "layer": "analysis",
      "title": "GSE297388 Gbtissue Strict Ortholog Stability V01",
      "identifier": "gse297388_gbtissue_strict_ortholog_stability_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_mouse_human_ortholog_gate_v01",
      "layer": "analysis",
      "title": "GSE297388 Mouse Human Ortholog Gate V01",
      "identifier": "gse297388_mouse_human_ortholog_gate_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_scrna_reference_preflight_v01",
      "layer": "analysis",
      "title": "GSE297388 Scrna Reference Preflight V01",
      "identifier": "gse297388_scrna_reference_preflight_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_section_replication_audit_v01",
      "layer": "analysis",
      "title": "GSE297388 Section Replication Audit V01",
      "identifier": "gse297388_section_replication_audit_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_spatial_context_embedding_baseline_v01",
      "layer": "analysis",
      "title": "GSE297388 Spatial Context Embedding Baseline V01",
      "identifier": "gse297388_spatial_context_embedding_baseline_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_spatial_context_knn_stability_v01",
      "layer": "analysis",
      "title": "GSE297388 Spatial Context Knn Stability V01",
      "identifier": "gse297388_spatial_context_knn_stability_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_spatial_context_negative_controls_v01",
      "layer": "analysis",
      "title": "GSE297388 Spatial Context Negative Controls V01",
      "identifier": "gse297388_spatial_context_negative_controls_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_spatial_gbtissue_composition_gate_v01",
      "layer": "analysis",
      "title": "GSE297388 Spatial Gbtissue Composition Gate V01",
      "identifier": "gse297388_spatial_gbtissue_composition_gate_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:gse297388_spatial_preflight_v01",
      "layer": "analysis",
      "title": "GSE297388 Spatial Preflight V01",
      "identifier": "gse297388_spatial_preflight_v01",
      "disease": "DMD",
      "modality": "spatial / representation",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/cell-browser/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:high_quality_upgrade",
      "layer": "analysis",
      "title": "High Quality Upgrade",
      "identifier": "high_quality_upgrade",
      "disease": "Cross-context",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:model_intelligence_execution_v01",
      "layer": "analysis",
      "title": "Model Intelligence Execution V01",
      "identifier": "model_intelligence_execution_v01",
      "disease": "Cross-context",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:multidisease_release_v01",
      "layer": "analysis",
      "title": "Multidisease Release V01",
      "identifier": "multidisease_release_v01",
      "disease": "Multi-disease",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:multidisease_release_v02",
      "layer": "analysis",
      "title": "Multidisease Release V02",
      "identifier": "multidisease_release_v02",
      "disease": "Multi-disease",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:nar_measured_dmd_evidence_v01",
      "layer": "analysis",
      "title": "Nar Measured Dmd Evidence V01",
      "identifier": "nar_measured_dmd_evidence_v01",
      "disease": "DMD",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "RESULT:site_deployment_v109",
      "layer": "analysis",
      "title": "Site Deployment V109",
      "identifier": "site_deployment_v109",
      "disease": "Cross-context",
      "modality": "derived analysis",
      "location": "workspace results",
      "state": "ANALYSIS_AVAILABLE",
      "scale": "result family",
      "public_route": "/resource/data-universe/",
      "purpose": "Traceable local analysis family retained in the project workspace."
    },
    {
      "asset_id": "MODEL:cellspatialfoundation",
      "layer": "model",
      "title": "Cellspatialfoundation",
      "identifier": "cellspatialfoundation",
      "disease": "Cross-context",
      "modality": "model code / checkpoint",
      "location": "workspace models",
      "state": "MODEL_ASSET_AVAILABLE",
      "scale": "79 files across 2 model families",
      "public_route": "/resource/models/",
      "purpose": "Local model or checkpoint asset; execution and disease applicability are audited separately."
    },
    {
      "asset_id": "MODEL:nicheformer",
      "layer": "model",
      "title": "Nicheformer",
      "identifier": "nicheformer",
      "disease": "Cross-context",
      "modality": "model code / checkpoint",
      "location": "workspace models",
      "state": "MODEL_ASSET_AVAILABLE",
      "scale": "79 files across 2 model families",
      "public_route": "/resource/models/",
      "purpose": "Local model or checkpoint asset; execution and disease applicability are audited separately."
    },
    {
      "asset_id": "PUBLICATION:CURATED-V08-5",
      "layer": "publication",
      "title": "Curated v08.5 semantic-contract working package",
      "identifier": "curated_v08_5",
      "disease": "Multi-disease",
      "modality": "manuscript · figures · tables · evidence-governance schema",
      "location": "workspace curated release",
      "state": "CURATED_WORKING_NOT_SUBMISSION_READY",
      "scale": "6 main figures (36 files) · 31 supplementary figures (114 files) · 44 tables",
      "public_route": "/resource/diseases/",
      "purpose": "Current working manuscript, figures, supplement, schema and website consistency contract; not submission-ready."
    },
    {
      "asset_id": "API:PUBLIC-RESOURCE",
      "layer": "api",
      "title": "Public website and typed API",
      "identifier": "public/resource",
      "disease": "Multi-disease",
      "modality": "HTML · JSON · TSV · schemas",
      "location": "public release",
      "state": "PUBLISHED",
      "scale": "669 API files",
      "public_route": "/resource/api",
      "purpose": "Publicly navigable research objects, manifests, schemas and downloads."
    },
    {
      "asset_id": "GAP:DMD-PERTURBATION-OUTCOME",
      "layer": "missing",
      "title": "Matched candidate-level DMD perturbation outcomes",
      "identifier": "DMD-PERTURBATION-OUTCOME",
      "disease": "DMD",
      "modality": "planned molecular + functional outcomes",
      "location": "not yet measured",
      "state": "DECISION_CRITICAL_GAP",
      "scale": "No governed candidate has matched DMD outcome yet",
      "public_route": "/resource/planner",
      "purpose": "Required to pilot-test disease-conditioned virtual-cell counterfactual assignment."
    },
    {
      "asset_id": "SERVER:DMD-SINGLE-CELL",
      "layer": "server",
      "title": "Integrated DMD single-cell analysis",
      "identifier": "DMD-SINGLE-CELL",
      "disease": "DMD",
      "modality": "single-cell · pseudobulk",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "annotated objects and cell-type differential results",
      "public_route": "/resource/data-universe/",
      "purpose": "annotated objects and cell-type differential results"
    },
    {
      "asset_id": "SERVER:DMD-SEMA3C",
      "layer": "server",
      "title": "DMD SEMA3C single-cell and spatial program",
      "identifier": "DMD-SEMA3C",
      "disease": "DMD",
      "modality": "single-cell · spatial · NicheNet",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "state-resolved and cell-communication analyses",
      "public_route": "/resource/data-universe/",
      "purpose": "state-resolved and cell-communication analyses"
    },
    {
      "asset_id": "SERVER:CROSS-SPECIES",
      "layer": "server",
      "title": "Human, mouse and macaque model-validity assets",
      "identifier": "CROSS-SPECIES",
      "disease": "DMD",
      "modality": "cross-species h5ad",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "SATURN and TranscriptFormer-ready counts",
      "public_route": "/resource/data-universe/",
      "purpose": "SATURN and TranscriptFormer-ready counts"
    },
    {
      "asset_id": "SERVER:VIRTUAL-CELL",
      "layer": "server",
      "title": "Virtual-cell execution workspace",
      "identifier": "VIRTUAL-CELL",
      "disease": "Cross-context",
      "modality": "STATE · baselines · candidate screens",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "66 result families and 2,278 result files",
      "public_route": "/resource/data-universe/",
      "purpose": "66 result families and 2,278 result files"
    },
    {
      "asset_id": "SERVER:CLINICAL-DMD",
      "layer": "server",
      "title": "Clinical DMD single-cell matrices",
      "identifier": "CLINICAL-DMD",
      "disease": "DMD",
      "modality": "patient 10x matrices",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "four own clinical DMD matrices",
      "public_route": "/resource/data-universe/",
      "purpose": "four own clinical DMD matrices"
    },
    {
      "asset_id": "SERVER:RAW-VALIDATION",
      "layer": "server",
      "title": "Large external validation archives",
      "identifier": "RAW-VALIDATION",
      "disease": "DMD",
      "modality": "FASTQ · STARsolo · SRA",
      "location": "server /share",
      "state": "SERVER_AVAILABLE",
      "scale": "retained for reproducibility; not required for current site rendering",
      "public_route": "/resource/data-universe/",
      "purpose": "retained for reproducibility; not required for current site rendering"
    },
    {
      "asset_id": "SERVER-PRIORITY:001",
      "layer": "server",
      "title": "Celltype Final Pseudobulk Delta De All",
      "identifier": "SRV-DATA-001",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "50M · priority 1",
      "public_route": "/resource/data-universe/",
      "purpose": "Cell-type-level DMD pseudobulk delta/DE table; best first sync."
    },
    {
      "asset_id": "SERVER-PRIORITY:002",
      "layer": "server",
      "title": "Baseline Pseudobulk S Vs C DE All Celltypes",
      "identifier": "SRV-DATA-002",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "37M · priority 1",
      "public_route": "/resource/data-universe/",
      "purpose": "Group-aware baseline pseudobulk DMD-vs-control DE."
    },
    {
      "asset_id": "SERVER-PRIORITY:003",
      "layer": "server",
      "title": "Source State Pseudobulk Counts",
      "identifier": "SRV-DATA-003",
      "disease": "DMD",
      "modality": "tsv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "6.4M · priority 1",
      "public_route": "/resource/data-universe/",
      "purpose": "Source-state pseudobulk counts for state-level DMD signal."
    },
    {
      "asset_id": "SERVER-PRIORITY:004",
      "layer": "server",
      "title": "Target State Dmd Vs Wt De Summary",
      "identifier": "SRV-DATA-004",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "3.7M · priority 1",
      "public_route": "/resource/data-universe/",
      "purpose": "Compact DMD-vs-WT target-state DE summary."
    },
    {
      "asset_id": "SERVER-PRIORITY:005",
      "layer": "server",
      "title": "Target State All Gene Pseudobulk",
      "identifier": "SRV-DATA-005",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "24M · priority 1",
      "public_route": "/resource/data-universe/",
      "purpose": "All-gene target-state pseudobulk matrix."
    },
    {
      "asset_id": "SERVER-PRIORITY:006",
      "layer": "server",
      "title": "Limma Delta DiD All Celltypes",
      "identifier": "SRV-DATA-006",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "50M · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "Alternative limma delta-DiD table."
    },
    {
      "asset_id": "SERVER-PRIORITY:007",
      "layer": "server",
      "title": "*",
      "identifier": "SRV-DATA-007",
      "disease": "DMD",
      "modality": "rds",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "many · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "Cell-type-specific pseudobulk count RDS files."
    },
    {
      "asset_id": "SERVER-PRIORITY:008",
      "layer": "server",
      "title": "DESeq2 * DMD Vs WT",
      "identifier": "SRV-DATA-008",
      "disease": "DMD",
      "modality": "csv",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "many · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "State-specific DMD-vs-WT DESeq2 outputs."
    },
    {
      "asset_id": "SERVER-PRIORITY:009",
      "layer": "server",
      "title": "Seurat Qc Harmony Annotated Final V1",
      "identifier": "SRV-DATA-009",
      "disease": "DMD",
      "modality": "rds",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "2.19G · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "Main annotated integrated DMD Seurat object; useful but larger and R-dependent."
    },
    {
      "asset_id": "SERVER-PRIORITY:010",
      "layer": "server",
      "title": "Seurat Raw Merged",
      "identifier": "SRV-DATA-010",
      "disease": "DMD",
      "modality": "rds",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "838M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Raw merged Seurat object."
    },
    {
      "asset_id": "SERVER-PRIORITY:011",
      "layer": "server",
      "title": "GSE156497 Merged Raw Rebuilt 20260604",
      "identifier": "SRV-DATA-011",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "238M · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "External validation AnnData object."
    },
    {
      "asset_id": "SERVER-PRIORITY:012",
      "layer": "server",
      "title": "Prjna772047 Human Muscle Phase41 Ready",
      "identifier": "SRV-DATA-012",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "179M · priority 2",
      "public_route": "/resource/data-universe/",
      "purpose": "Human muscle DMD/healthy ready AnnData."
    },
    {
      "asset_id": "SERVER-PRIORITY:013",
      "layer": "server",
      "title": "Human Saturn Ready Counts",
      "identifier": "SRV-DATA-013",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "38M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Human SATURN/TranscriptFormer-ready counts."
    },
    {
      "asset_id": "SERVER-PRIORITY:014",
      "layer": "server",
      "title": "Mouse Saturn Ready Counts",
      "identifier": "SRV-DATA-014",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "26M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Mouse SATURN/TranscriptFormer-ready counts."
    },
    {
      "asset_id": "SERVER-PRIORITY:015",
      "layer": "server",
      "title": "Macaque Saturn Ready Counts",
      "identifier": "SRV-DATA-015",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "READY_FOR_ANALYSIS",
      "scale": "70M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Macaque SATURN/TranscriptFormer-ready counts."
    },
    {
      "asset_id": "SERVER-PRIORITY:016",
      "layer": "server",
      "title": "*",
      "identifier": "SRV-DATA-016",
      "disease": "DMD",
      "modality": "h5ad",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "21M-688M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Human dystrophinopathy Visium/CellxGene spatial assets."
    },
    {
      "asset_id": "SERVER-PRIORITY:017",
      "layer": "server",
      "title": "GSE135893 Matrix.Mtx",
      "identifier": "SRV-DATA-017",
      "disease": "DMD",
      "modality": "mtx.gz",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "1.08G · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Large public DMD matrix; requires metadata harmonization."
    },
    {
      "asset_id": "SERVER-PRIORITY:018",
      "layer": "server",
      "title": "GSE288958 RAW",
      "identifier": "SRV-DATA-018",
      "disease": "DMD",
      "modality": "tar",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "360M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "GSE288958 raw package."
    },
    {
      "asset_id": "SERVER-PRIORITY:019",
      "layer": "server",
      "title": "Human Gse288958 Counts Genes By Cells",
      "identifier": "SRV-DATA-019",
      "disease": "DMD",
      "modality": "mtx",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "178M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "GSE288958 exported counts matrix."
    },
    {
      "asset_id": "SERVER-PRIORITY:020",
      "layer": "server",
      "title": "Restricted clinical DMD matrix 20",
      "identifier": "SRV-DATA-020",
      "disease": "DMD",
      "modality": "mtx.gz",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "109M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Restricted clinical matrix; public metadata summary only."
    },
    {
      "asset_id": "SERVER-PRIORITY:021",
      "layer": "server",
      "title": "Restricted clinical DMD matrix 21",
      "identifier": "SRV-DATA-021",
      "disease": "DMD",
      "modality": "mtx.gz",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "134M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Restricted clinical matrix; public metadata summary only."
    },
    {
      "asset_id": "SERVER-PRIORITY:022",
      "layer": "server",
      "title": "Restricted clinical DMD matrix 22",
      "identifier": "SRV-DATA-022",
      "disease": "DMD",
      "modality": "mtx.gz",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "117M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Restricted clinical matrix; public metadata summary only."
    },
    {
      "asset_id": "SERVER-PRIORITY:023",
      "layer": "server",
      "title": "Restricted clinical DMD matrix 23",
      "identifier": "SRV-DATA-023",
      "disease": "DMD",
      "modality": "mtx.gz",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "69M · priority 3",
      "public_route": "/resource/data-universe/",
      "purpose": "Restricted clinical matrix; public metadata summary only."
    },
    {
      "asset_id": "SERVER-PRIORITY:024",
      "layer": "server",
      "title": "DS03 PRJNA772047",
      "identifier": "SRV-DATA-024",
      "disease": "DMD",
      "modality": "fastq+starsolo",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "197G · priority 4",
      "public_route": "/resource/data-universe/",
      "purpose": "Human Duchenne vs healthy; avoid first full sync."
    },
    {
      "asset_id": "SERVER-PRIORITY:025",
      "layer": "server",
      "title": "DS02 PRJNA1218493",
      "identifier": "SRV-DATA-025",
      "disease": "DMD",
      "modality": "fastq+starsolo",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "235G · priority 4",
      "public_route": "/resource/data-universe/",
      "purpose": "Human DMD/normal; avoid first full sync."
    },
    {
      "asset_id": "SERVER-PRIORITY:026",
      "layer": "server",
      "title": "Prjna771932 Lite Rescue 20260612",
      "identifier": "SRV-DATA-026",
      "disease": "DMD",
      "modality": "sra",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "45G · priority 4",
      "public_route": "/resource/data-universe/",
      "purpose": "Mouse mdx/WT SRA; use only if reprocessing is needed."
    },
    {
      "asset_id": "SERVER-PRIORITY:027",
      "layer": "server",
      "title": "Matrix",
      "identifier": "SRV-DATA-027",
      "disease": "DMD",
      "modality": "mtx",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "15M · priority 4",
      "public_route": "/resource/data-universe/",
      "purpose": "Mouse mdx STARsolo raw matrix."
    },
    {
      "asset_id": "SERVER-PRIORITY:028",
      "layer": "server",
      "title": "Matrix",
      "identifier": "SRV-DATA-028",
      "disease": "DMD",
      "modality": "mtx",
      "location": "server /share · storage path withheld",
      "state": "SERVER_AVAILABLE",
      "scale": "7.6M · priority 4",
      "public_route": "/resource/data-universe/",
      "purpose": "Mouse mdx STARsolo raw matrix."
    }
  ],
  "interpretation": "The platform inventory is broader than the formal five-dataset training registry. Asset presence, model execution and disease-qualified prediction outcomes are separate states.",
  "privacy_boundary": "Server paths are summarized by collection. The public object does not expose credentials, private donor identifiers or unrestricted storage paths.",
  "scientific_boundary": "A large data universe does not by itself calibrate a candidate-conditioned DMD counterfactual. The Studio abstains where matched target-context outcomes are absent."
}